J3_4LFB_001

3D structure

PDB id

4LFB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.01 Å

Loop

Sequence

CUAG*CGAAG*CGUUAAG

Length

16 nucleotides

Bulged bases

4LFB|1|A|U|871, 4LFB|1|A|A|873

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.3

Basepair signature

cWW-tSH-F-tWW-tHS-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

4LFB|1|A|C|826
4LFB|1|A|U|827
4LFB|1|A|A|828
4LFB|1|A|G|829
*
4LFB|1|A|C|857
4LFB|1|A|G|858
4LFB|1|A|A|859
4LFB|1|A|A|860
4LFB|1|A|G|861
*
4LFB|1|A|C|868
4LFB|1|A|G|869
4LFB|1|A|U|870
4LFB|1|A|U|871
4LFB|1|A|A|872
4LFB|1|A|A|873
4LFB|1|A|G|874

Current chains

Chain A

16S rRNA

Nearby chains

Chain B

ribosomal protein S2

Chain H

ribosomal protein S8