J3_4LFB_012

3D structure

PDB id

4LFB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.01 Å

Loop

Sequence

UG*CGCCGAUGG*CAG

Length

14 nucleotides

Bulged bases

4LFB|1|A|U|723

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_11934.3

Basepair signature

cWW-F-cWW-F-F-tWW-F-cWW-F

Number of instances in this motif group

5

Unit IDs

4LFB|1|A|U|672
4LFB|1|A|G|673
*
4LFB|1|A|C|717
4LFB|1|A|G|718
4LFB|1|A|C|719
4LFB|1|A|C|720
4LFB|1|A|G|721
4LFB|1|A|A|722
4LFB|1|A|U|723
4LFB|1|A|G|724
4LFB|1|A|G|725
*
4LFB|1|A|C|732
4LFB|1|A|A|733
4LFB|1|A|G|734

Current chains

Chain A

16S rRNA

Nearby chains

Chain F

ribosomal protein S6

Chain K

ribosomal protein S11

Chain O

ribosomal protein S15

Chain R

ribosomal protein S18