Motif J3_17385.8 Version J3_17385.8 of this group appears in releases 4.14 to 4.14
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | break | 4 | 5 | 6 | 7 | 8 | break | 9 | 10 | 11 | 12 | 13 | 1-13 | 3-4 | 5-11 | 6-11 | 7-10 | 7-12 | 8-9 | 10-12 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_1KUQ_002 | 1KUQ | 0.4800 | 0 | B | 16S RIBOSOMAL RNA FRAGMENT | C | 4 | G | 5 | G | 6 | * | C | 15 | U | 16 | A | 17 | G | 18 | A | 19 | * | U | 50 | G | 51 | A | 52 | C | 53 | G | 54 | cWW | cWW | tWH | tHS | cWW | cWW | ncSH | |
| 2 | J3_4LFB_015 | 4LFB | 0.4860 | 0 | A | SSU rRNA | C | 586 | G | 587 | G | 588 | * | C | 651 | U | 652 | A | 653 | G | 654 | A | 655 | * | U | 751 | G | 752 | A | 753 | C | 754 | G | 755 | cWW | cWW | tWH | tHS | cWW | cWW | ||
| 3 | J3_8B0X_028 | 8B0X | 0.4393 | 0 | A | SSU rRNA | C | 586 | G | 587 | G | 588 | * | C | 651 | U | 652 | U | 653 | G | 654 | A | 655 | * | U | 751 | G | 752 | A | 753 | C | 754 | G | 755 | cWW | cWW | tWH | tHS | cWW | cWW | ||
| 4 | J3_9PN5_031 | 9PN5 | 0.0493 | 1 | B5 | SSU rRNA | U | 633 | G | 634 | A | 635 | * | U | 861 | A | 862 | A | 863 | A | 865 | G | 866 | * | C | 962 | A | 963 | U | 964 | U | 965 | A | 966 | cWW | cWW | ntSH | tHW | cWW | cWW | ||
| 5 | J3_9H3G_031 | 9H3G | 0.0000 | 1 | h1 | SSU rRNA | U | 635 | G | 636 | A | 637 | * | U | 862 | A | 863 | A | 864 | A | 866 | G | 867 | * | C | 963 | A | 964 | U | 965 | U | 966 | A | 967 | cWW | cWW | ntSH | tHW | cWW | cWW | ||
| 6 | J3_9SUM_028 | 9SUM | 0.0732 | 1 | CA | SSU rRNA | U | 622 | G | 623 | A | 624 | * | U | 831 | A | 832 | A | 833 | A | 835 | G | 836 | * | C | 932 | A | 933 | U | 934 | U | 935 | A | 936 | cWW | cWW | ntSH | tHW | ntWS | cWW | ||
| 7 | J3_8CRE_074 | 8CRE | 0.1441 | 1 | CM | SSU rRNA | U | 631 | G | 632 | A | 633 | * | U | 846 | A | 847 | A | 848 | A | 850 | G | 851 | * | C | 947 | A | 948 | U | 949 | U | 950 | A | 951 | cWW | cWW | tHW | ntWS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGA*UAAUAG*CAUUA | 3 |
| CGG*CUAGA*UGACG | 2 |
| CGG*CUUGA*UGACG | 1 |
| UGA*UAACAG*CAUUA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| G*AAUA*AUU | 3 |
| G*UAG*GAC | 2 |
| G*UUG*GAC | 1 |
| G*AACA*AUU | 1 |
Release history
| Release | 4.14 |
|---|---|
| Date | 2026-09-09 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (7)
- Basepair signature
- cWW-F-cWW-cWW-tHW-F-F-cWW
- Heat map statistics
- Min 0.05 | Avg 0.27 | Max 0.53
Coloring options: