J3_4LFZ_056

3D structure

PDB id

4LFZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U in the Absence of Paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.92 Å

Loop

Sequence

GC*GUGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4LFZ_056 not in the Motif Atlas

Geometric match to J3_8VTW_036

Geometric discrepancy: 0.1048

The information below is about J3_8VTW_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_69021.1

Basepair signature

cWW-tWH-cWW-tSH-F-cWW-F

Number of instances in this motif group

7

Unit IDs

4LFZ|1|RA|G|30
4LFZ|1|RA|C|31
*
4LFZ|1|RA|G|474
4LFZ|1|RA|U|475
4LFZ|1|RA|G|476
4LFZ|1|RA|A|477
4LFZ|1|RA|A|478
4LFZ|1|RA|A|479
4LFZ|1|RA|A|480
4LFZ|1|RA|G|481
*
4LFZ|1|RA|C|509
4LFZ|1|RA|C|510

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RU

50S ribosomal protein L20

Chain RW

50S ribosomal protein L22

Chain RY

50S ribosomal protein L24