#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2 3 4 5 6 7 8break 9 10break 11 121-122-63-78-910-11
1 J3_7A0S_0017A0S0.12980X LSU rRNAG485U486G487A488A489A490A491G492*C519C520*G30C31cWWntSHcWWcWW
2 J3_5J7L_0365J7L0.07550DA LSU rRNAG474C475G476A477A478A479A480G481*C509C510*G30C31cWWntWHtSHcWW
3 J3_8VTW_0368VTW0.000001A LSU rRNAG474U475G476A477A478A479A480G481*C509C510*G30C31cWW
4 J3_4WF9_0104WF90.08840X LSU rRNAG520U521G522A523A524A525A526G527*C554C555*G30C31cWWtWHntSHcWWcWW
5 J3_5TBW_0025TBW0.123401+4 LSU rRNA + 5.8S rRNAA369U370G371A372A373A374A375G376*C403G404*C19U20cWWtWHtSHcWWcWW
6 J3_8C3A_0488C3A0.122501+4 LSU rRNA + 5.8S rRNAA369U370G371A372A373A374A375G376*C403G404*C19U20cWWtSHcWWcWW
7 J3_4V9F_0114V9F0.124100 LSU rRNAC480U481G482C483A484A485A486G487*C515A516*U27G28cWWtWHtSHcWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
GC*GUGAAAAG*CC3
AUGAAAAG*CG*CU2
GC*GCGAAAAG*CC1
UG*CUGCAAAG*CA1
Non-Watson-Crick part of the motif
SequenceCounts
*UGAAAA*3
UGAAAA**2
*CGAAAA*1
*UGCAAA*1

Release history

Release3.883.89
Date2024-09-112024-10-09
StatusNew id, 1 parentExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (7)
  • Basepair signature
    cWW-tWH-cWW-tSH-F-cWW-F
    Heat map statistics
    Min 0.08 | Avg 0.11 | Max 0.18
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