J3_4LFZ_078

3D structure

PDB id

4LFZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U in the Absence of Paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.92 Å

Loop

Sequence

CGAAG*CGCCAGAGAG*CGUAG

Length

20 nucleotides

Bulged bases

4LFZ|1|RA|G|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4LFZ_078 not in the Motif Atlas

Homologous match to J3_9DFE_006

Geometric discrepancy: 0.0914

The information below is about J3_9DFE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

4LFZ|1|RA|C|297
4LFZ|1|RA|G|298
4LFZ|1|RA|A|299
4LFZ|1|RA|A|300
4LFZ|1|RA|G|301
*
4LFZ|1|RA|C|316
4LFZ|1|RA|G|317
4LFZ|1|RA|C|318
4LFZ|1|RA|C|319
4LFZ|1|RA|A|320
4LFZ|1|RA|G|321
4LFZ|1|RA|A|322
4LFZ|1|RA|G|323
4LFZ|1|RA|A|324
4LFZ|1|RA|G|325
*
4LFZ|1|RA|C|337
4LFZ|1|RA|G|338
4LFZ|1|RA|U|339
4LFZ|1|RA|A|340
4LFZ|1|RA|G|341

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RF

50S ribosomal protein L4

Chain RY

50S ribosomal protein L24