J3_4LFZ_082

3D structure

PDB id

4LFZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U in the Absence of Paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.92 Å

Loop

Sequence

CGUAAG*CGG*UCAG

Length

13 nucleotides

Bulged bases

4LFZ|1|YA|A|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4LFZ_082 not in the Motif Atlas

Homologous match to J3_9DFE_010

Geometric discrepancy: 0.0981

The information below is about J3_9DFE_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

4LFZ|1|YA|C|1298
4LFZ|1|YA|G|1299
4LFZ|1|YA|U|1300
4LFZ|1|YA|A|1301
4LFZ|1|YA|A|1302
4LFZ|1|YA|G|1303
*
4LFZ|1|YA|C|1625
4LFZ|1|YA|G|1626
4LFZ|1|YA|G|1627
*
4LFZ|1|YA|U|1639
4LFZ|1|YA|C|1640
4LFZ|1|YA|A|1641
4LFZ|1|YA|G|1642

Current chains

Chain YA

23S rRNA

Nearby chains