J3_9DFE_010

3D structure

PDB id

9DFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin and protein Y at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CGUAAG*CGG*UCAG

Length

13 nucleotides

Bulged bases

9DFE|1|1A|A|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.7

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

9DFE|1|1A|C|1298
9DFE|1|1A|G|1299
9DFE|1|1A|U|1300
9DFE|1|1A|A|1301
9DFE|1|1A|A|1302
9DFE|1|1A|G|1303
*
9DFE|1|1A|C|1625
9DFE|1|1A|G|1626
9DFE|1|1A|G|1627
*
9DFE|1|1A|U|1639
9DFE|1|1A|C|1640
9DFE|1|1A|A|1641
9DFE|1|1A|G|1642

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains