J3_4LNT_025

3D structure

PDB id

4LNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-U on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.94 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

4LNT|1|RA|A|2518, 4LNT|1|RA|U|2519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4LNT_025 not in the Motif Atlas

Homologous match to J3_9DFE_017

Geometric discrepancy: 0.121

The information below is about J3_9DFE_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.5

Basepair signature

cWW-tWH-cHW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

4LNT|1|RA|C|2517
4LNT|1|RA|A|2518
4LNT|1|RA|U|2519
4LNT|1|RA|C|2520
*
4LNT|1|RA|G|2545
4LNT|1|RA|U|2546
4LNT|1|RA|U|2547
*
4LNT|1|RA|A|2561
4LNT|1|RA|U|2562
4LNT|1|RA|U|2563
4LNT|1|RA|A|2564
4LNT|1|RA|A|2565
4LNT|1|RA|A|2566
4LNT|1|RA|G|2567

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RO

50S ribosomal protein L14