J3_4LNT_041

3D structure

PDB id

4LNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-U on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.94 Å

Loop

Sequence

GC*GUGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4LNT_041 not in the Motif Atlas

Homologous match to J3_7RQB_001

Geometric discrepancy: 0.0578

The information below is about J3_7RQB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_65070.3

Basepair signature

cWW-tWH-cWW-tSH-F-cWW-F

Number of instances in this motif group

4

Unit IDs

4LNT|1|YA|G|30
4LNT|1|YA|C|31
*
4LNT|1|YA|G|474
4LNT|1|YA|U|475
4LNT|1|YA|G|476
4LNT|1|YA|A|477
4LNT|1|YA|A|478
4LNT|1|YA|A|479
4LNT|1|YA|A|480
4LNT|1|YA|G|481
*
4LNT|1|YA|C|509
4LNT|1|YA|C|510

Current chains

Chain YA

23S rRNA

Nearby chains

Chain YU

50S ribosomal protein L20

Chain YW

50S ribosomal protein L22

Chain YY

50S ribosomal protein L24