Motif J3_65070.3 Version J3_65070.3 of this group appears in releases 3.54 to 3.86
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | break | 9 | 10 | break | 11 | 12 | 1-12 | 2-6 | 3-7 | 8-9 | 10-11 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_7A0S_001 | 7A0S | 0.0000 | 0 | X | LSU rRNA | G | 485 | U | 486 | G | 487 | A | 488 | A | 489 | A | 490 | A | 491 | G | 492 | * | C | 519 | C | 520 | * | G | 30 | C | 31 | cWW | tWH | ntSH | cWW | cWW |
| 2 | J3_5J7L_036 | 5J7L | 0.1156 | 0 | DA | LSU rRNA | G | 474 | C | 475 | G | 476 | A | 477 | A | 478 | A | 479 | A | 480 | G | 481 | * | C | 509 | C | 510 | * | G | 30 | C | 31 | cWW | ntWH | tSH | cWW | cWW |
| 3 | J3_7RQB_001 | 7RQB | 0.1231 | 0 | 1A | LSU rRNA | G | 474 | U | 475 | G | 476 | A | 477 | A | 478 | A | 479 | A | 480 | G | 481 | * | C | 509 | C | 510 | * | G | 30 | C | 31 | cWW | tWH | tSH | cWW | cWW |
| 4 | J3_5TBW_002 | 5TBW | 0.1636 | 0 | 1+4 | LSU rRNA + 5.8S rRNA | A | 369 | U | 370 | G | 371 | A | 372 | A | 373 | A | 374 | A | 375 | G | 376 | * | C | 403 | G | 404 | * | C | 19 | U | 20 | cWW | tWH | tSH | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GC*GUGAAAAG*CC | 2 |
| GC*GCGAAAAG*CC | 1 |
| AUGAAAAG*CG*CU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *UGAAAA* | 2 |
| *CGAAAA* | 1 |
| UGAAAA** | 1 |
Release history
| Release | 3.54 | 3.55 | 3.56 | 3.57 | 3.58 | 3.59 | 3.60 | 3.61 | 3.62 | 3.63 | 3.64 | 3.65 | 3.66 | 3.67 | 3.68 | 3.69 | 3.70 | 3.71 | 3.72 | 3.73 | 3.74 | 3.75 | 3.76 | 3.77 | 3.78 | 3.79 | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2022-02-02 | 2022-03-02 | 2022-03-30 | 2022-04-27 | 2022-05-25 | 2022-06-22 | 2022-07-20 | 2022-08-17 | 2022-10-12 | 2022-11-09 | 2022-12-07 | 2023-01-04 | 2023-02-01 | 2023-03-01 | 2023-03-29 | 2023-04-26 | 2023-05-24 | 2023-06-21 | 2023-07-19 | 2023-08-16 | 2023-09-13 | 2023-10-11 | 2023-11-08 | 2023-12-06 | 2024-01-03 | 2024-01-03 | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Basepair signature
- cWW-tWH-cWW-tSH-F-cWW-F
- Heat map statistics
- Min 0.07 | Avg 0.09 | Max 0.16
Coloring options: