3D structure

PDB id
4LNT (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-U on the Ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
2.94 Å

Loop

Sequence
CGAAG*CGCCAGAGAG*CGUAG
Length
20 nucleotides
Bulged bases
4LNT|1|RA|G|321
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4LNT_064 not in the Motif Atlas
Homologous match to J3_9DFE_006
Geometric discrepancy: 0.0684
The information below is about J3_9DFE_006
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_46299.2
Basepair signature
cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW
Number of instances in this motif group
3

Unit IDs

4LNT|1|RA|C|297
4LNT|1|RA|G|298
4LNT|1|RA|A|299
4LNT|1|RA|A|300
4LNT|1|RA|G|301
*
4LNT|1|RA|C|316
4LNT|1|RA|G|317
4LNT|1|RA|C|318
4LNT|1|RA|C|319
4LNT|1|RA|A|320
4LNT|1|RA|G|321
4LNT|1|RA|A|322
4LNT|1|RA|G|323
4LNT|1|RA|A|324
4LNT|1|RA|G|325
*
4LNT|1|RA|C|337
4LNT|1|RA|G|338
4LNT|1|RA|U|339
4LNT|1|RA|A|340
4LNT|1|RA|G|341

Current chains

Chain RA
23S rRNA

Nearby chains

Chain RF
50S ribosomal protein L4
Chain RY
50S ribosomal protein L24

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 2.2778 s