3D structure

PDB id
4LNT (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-U on the Ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
2.94 Å

Loop

Sequence
GCCUAAG*UAGGAAUCU*AGC
Length
19 nucleotides
Bulged bases
4LNT|1|XA|C|48, 4LNT|1|XA|A|50, 4LNT|1|XA|A|51
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4LNT_069 not in the Motif Atlas
Homologous match to J3_4LFB_014
Geometric discrepancy: 0.0826
The information below is about J3_4LFB_014
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_46317.4
Basepair signature
cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F
Number of instances in this motif group
4

Unit IDs

4LNT|1|XA|G|46
4LNT|1|XA|C|47
4LNT|1|XA|C|48
4LNT|1|XA|U|49
4LNT|1|XA|A|50
4LNT|1|XA|A|51
4LNT|1|XA|G|52
*
4LNT|1|XA|U|359
4LNT|1|XA|A|360
4LNT|1|XA|G|361
4LNT|1|XA|G|362
4LNT|1|XA|A|363
4LNT|1|XA|A|364
4LNT|1|XA|U|365
4LNT|1|XA|C|366
4LNT|1|XA|U|367
*
4LNT|1|XA|A|393
4LNT|1|XA|G|394
4LNT|1|XA|C|395

Current chains

Chain XA
16S rRNA

Nearby chains

Chain XL
30S ribosomal protein S12
Chain XP
30S ribosomal protein S16

Coloring options:


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