3D structure

PDB id
4LSK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of tRNA Proline (CGG) Bound to Codon CCG-G on the Ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.48 Å

Loop

Sequence
UG*CGCCGAUGG*CAG
Length
14 nucleotides
Bulged bases
4LSK|1|QA|U|723
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4LSK_003 not in the Motif Atlas
Homologous match to J3_6CZR_017
Geometric discrepancy: 0.1042
The information below is about J3_6CZR_017
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_11934.3
Basepair signature
cWW-F-cWW-F-F-tWW-F-cWW-F
Number of instances in this motif group
5

Unit IDs

4LSK|1|QA|U|672
4LSK|1|QA|G|673
*
4LSK|1|QA|C|717
4LSK|1|QA|G|718
4LSK|1|QA|C|719
4LSK|1|QA|C|720
4LSK|1|QA|G|721
4LSK|1|QA|A|722
4LSK|1|QA|U|723
4LSK|1|QA|G|724
4LSK|1|QA|G|725
*
4LSK|1|QA|C|732
4LSK|1|QA|A|733
4LSK|1|QA|G|734

Current chains

Chain QA
16S rRNA

Nearby chains

Chain QF
30S ribosomal protein S6
Chain QK
30S ribosomal protein S11
Chain QO
30S ribosomal protein S15
Chain QR
30S ribosomal protein S18
Chain RD
50S ribosomal protein L2

Coloring options:


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