3D structure

PDB id
4LSK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of tRNA Proline (CGG) Bound to Codon CCG-G on the Ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.48 Å

Loop

Sequence
GCGGGAC*GGCAG*CC
Length
14 nucleotides
Bulged bases
4LSK|1|RA|A|1384
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4LSK_022 not in the Motif Atlas
Homologous match to J3_7RQB_009
Geometric discrepancy: 0.1084
The information below is about J3_7RQB_009
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_04858.2
Basepair signature
cWW-F-cWW-F-F-F-F-F-cWW
Number of instances in this motif group
3

Unit IDs

4LSK|1|RA|G|1344
4LSK|1|RA|C|1345
4LSK|1|RA|G|1346
4LSK|1|RA|G|1347
4LSK|1|RA|G|1348
4LSK|1|RA|A|1349
4LSK|1|RA|C|1350
*
4LSK|1|RA|G|1381
4LSK|1|RA|G|1382
4LSK|1|RA|C|1383
4LSK|1|RA|A|1384
4LSK|1|RA|G|1385
*
4LSK|1|RA|C|1402
4LSK|1|RA|C|1403

Current chains

Chain RA
23S rRNA

Nearby chains

Chain R7
50S ribosomal protein L34

Coloring options:


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