3D structure

PDB id
4LSK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of tRNA Proline (CGG) Bound to Codon CCG-G on the Ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.48 Å

Loop

Sequence
CGC*GGACUGC*GAGGAAGGAG
Length
20 nucleotides
Bulged bases
4LSK|1|XA|A|1183
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4LSK_040 not in the Motif Atlas
Homologous match to J3_4LFB_018
Geometric discrepancy: 0.2059
The information below is about J3_4LFB_018
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_17791.2
Basepair signature
cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW
Number of instances in this motif group
2

Unit IDs

4LSK|1|XA|C|1116
4LSK|1|XA|G|1117
4LSK|1|XA|C|1118
*
4LSK|1|XA|G|1155
4LSK|1|XA|G|1156
4LSK|1|XA|A|1157
4LSK|1|XA|C|1158
4LSK|1|XA|U|1159
4LSK|1|XA|G|1160
4LSK|1|XA|C|1161
*
4LSK|1|XA|G|1175
4LSK|1|XA|A|1176
4LSK|1|XA|G|1177
4LSK|1|XA|G|1178
4LSK|1|XA|A|1179
4LSK|1|XA|A|1180
4LSK|1|XA|G|1181
4LSK|1|XA|G|1182
4LSK|1|XA|A|1183
4LSK|1|XA|G|1184

Current chains

Chain XA
16S rRNA

Nearby chains

Chain QJ
30S ribosomal protein S10
Chain XB
30S ribosomal protein S2
Chain XI
30S ribosomal protein S9
Chain XJ
30S ribosomal protein S10
Chain XN
30S ribosomal protein S14

Coloring options:


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