3D structure

PDB id
4LSK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of tRNA Proline (CGG) Bound to Codon CCG-G on the Ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.48 Å

Loop

Sequence
CGAAG*CGCCAGAGAG*CGUAG
Length
20 nucleotides
Bulged bases
4LSK|1|RA|G|321
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4LSK_063 not in the Motif Atlas
Homologous match to J3_9DFE_006
Geometric discrepancy: 0.0749
The information below is about J3_9DFE_006
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_46299.2
Basepair signature
cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW
Number of instances in this motif group
3

Unit IDs

4LSK|1|RA|C|297
4LSK|1|RA|G|298
4LSK|1|RA|A|299
4LSK|1|RA|A|300
4LSK|1|RA|G|301
*
4LSK|1|RA|C|316
4LSK|1|RA|G|317
4LSK|1|RA|C|318
4LSK|1|RA|C|319
4LSK|1|RA|A|320
4LSK|1|RA|G|321
4LSK|1|RA|A|322
4LSK|1|RA|G|323
4LSK|1|RA|A|324
4LSK|1|RA|G|325
*
4LSK|1|RA|C|337
4LSK|1|RA|G|338
4LSK|1|RA|U|339
4LSK|1|RA|A|340
4LSK|1|RA|G|341

Current chains

Chain RA
23S rRNA

Nearby chains

Chain RF
50S ribosomal protein L4
Chain RY
50S ribosomal protein L24

Coloring options:


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