3D structure

PDB id
4LSK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of tRNA Proline (CGG) Bound to Codon CCG-G on the Ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.48 Å

Loop

Sequence
GGGACG*CC*GAAAAGC
Length
15 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4LSK_076 not in the Motif Atlas
Homologous match to J3_9DFE_013
Geometric discrepancy: 0.0918
The information below is about J3_9DFE_013
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_34864.2
Basepair signature
cWW-F-cWW-F-tHH-F-tHS-tHS-cWW
Number of instances in this motif group
4

Unit IDs

4LSK|1|YA|G|1424
4LSK|1|YA|G|1425
4LSK|1|YA|G|1426
4LSK|1|YA|A|1427
4LSK|1|YA|C|1428
4LSK|1|YA|G|1429
*
4LSK|1|YA|C|1564
4LSK|1|YA|C|1565
*
4LSK|1|YA|G|1568
4LSK|1|YA|A|1569
4LSK|1|YA|A|1570
4LSK|1|YA|A|1571
4LSK|1|YA|A|1572
4LSK|1|YA|G|1573
4LSK|1|YA|C|1574

Current chains

Chain YA
23S rRNA

Nearby chains

Chain YD
50S ribosomal protein L2

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2651 s
Application loaded.