J3_4LVW_001

3D structure

PDB id

4LVW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the THF riboswitch bound to 7-deazaguanine

Experimental method

X-RAY DIFFRACTION

Resolution

1.77 Å

Loop

Sequence

UUAAGUGU*AACGAAG*CG

Length

17 nucleotides

Bulged bases

4LVW|1|A|U|21

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_53439.1

Basepair signature

cWW-tSS-F-cWW-tHW-F-F-cWW-F-cWW-F

Number of instances in this motif group

2

Unit IDs

4LVW|1|A|U|20
4LVW|1|A|U|21
4LVW|1|A|A|22
4LVW|1|A|A|23
4LVW|1|A|G|24
4LVW|1|A|U|25
4LVW|1|A|G|26
4LVW|1|A|U|27
*
4LVW|1|A|A|51
4LVW|1|A|A|52
4LVW|1|A|C|53
4LVW|1|A|G|54
4LVW|1|A|A|55
4LVW|1|A|A|56
4LVW|1|A|G|57
*
4LVW|1|A|C|64
4LVW|1|A|G|65

Current chains

Chain A

THF riboswitch

Nearby chains