J3_4NXM_016

3D structure

PDB id

4NXM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the 30S ribosomal subunit from a GidB (RsmG) mutant of Thermus thermophilus (HB8)

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

UG*UGUU*GCAA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4NXM_016 not in the Motif Atlas

Homologous match to J3_4LFB_017

Geometric discrepancy: 0.0885

The information below is about J3_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_79369.1

Basepair signature

cWW-cWW-tSS-F-F-cWW-F

Number of instances in this motif group

1

Unit IDs

4NXM|1|A|U|1073
4NXM|1|A|G|1074
*
4NXM|1|A|U|1083
4NXM|1|A|G|1084
4NXM|1|A|U|1085
4NXM|1|A|U|1086
*
4NXM|1|A|G|1099
4NXM|1|A|C|1100
4NXM|1|A|A|1101
4NXM|1|A|A|1102

Current chains

Chain A

16S rRNA

Nearby chains

Chain B

ribosomal protein S2

Chain E

ribosomal protein S5