3D structure

PDB id
4NXN (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of the 30S ribosomal subunit from a GidB (RsmG) mutant of Thermus thermophilus (HB8), bound with streptomycin
Experimental method
X-RAY DIFFRACTION
Resolution
3.54 Å

Loop

Sequence
UUUAAUUC*GAAGAACCUUACC*GGGCGA
Length
27 nucleotides
Bulged bases
4NXN|1|A|A|975, 4NXN|1|A|G|976, 4NXN|1|A|A|978
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4NXN_004 not in the Motif Atlas
Geometric match to J3_6CZR_062
Geometric discrepancy: 0.1426
The information below is about J3_6CZR_062
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_59791.1
Basepair signature
cWW-F-F-F-F-F-tSS-F-F-F-F-F-F-F-F-F-F-cWW-F-F-F
Number of instances in this motif group
1

Unit IDs

4NXN|1|A|U|955
4NXN|1|A|U|956
4NXN|1|A|U|957
4NXN|1|A|A|958
4NXN|1|A|A|959
4NXN|1|A|U|960
4NXN|1|A|U|961
4NXN|1|A|C|962
*
4NXN|1|A|G|973
4NXN|1|A|A|974
4NXN|1|A|A|975
4NXN|1|A|G|976
4NXN|1|A|A|977
4NXN|1|A|A|978
4NXN|1|A|C|979
4NXN|1|A|C|980
4NXN|1|A|U|981
4NXN|1|A|U|982
4NXN|1|A|A|983
4NXN|1|A|C|984
4NXN|1|A|C|985
*
4NXN|1|A|G|1220
4NXN|1|A|G|1221
4NXN|1|A|G|1222
4NXN|1|A|C|1223
4NXN|1|A|G|1224
4NXN|1|A|A|1225

Current chains

Chain A
16S rRNA

Nearby chains

Chain J
ribosomal protein S10
Chain M
ribosomal protein S13
Chain N
ribosomal protein S14
Chain S
ribosomal protein S19

Coloring options:


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