J3_4NXN_005

3D structure

PDB id

4NXN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the 30S ribosomal subunit from a GidB (RsmG) mutant of Thermus thermophilus (HB8), bound with streptomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.54 Å

Loop

Sequence

CUUG*CAG*CUUACG

Length

13 nucleotides

Bulged bases

4NXN|1|A|U|1212

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4NXN_005 not in the Motif Atlas

Homologous match to J3_4LFB_005

Geometric discrepancy: 0.2382

The information below is about J3_4LFB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_82572.1

Basepair signature

cWW-tSH-tWW-F-cWW-tHW-F-F-cWW

Number of instances in this motif group

2

Unit IDs

4NXN|1|A|C|990
4NXN|1|A|U|991
4NXN|1|A|U|992
4NXN|1|A|G|993
*
4NXN|1|A|C|1045
4NXN|1|A|A|1046
4NXN|1|A|G|1047
*
4NXN|1|A|C|1210
4NXN|1|A|U|1211
4NXN|1|A|U|1212
4NXN|1|A|A|1213
4NXN|1|A|C|1214
4NXN|1|A|G|1215

Current chains

Chain A

16S rRNA

Nearby chains

Chain N

ribosomal protein S14