J3_4OX9_005

3D structure

PDB id

4OX9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the aminoglycoside resistance methyltransferase NpmA bound to the 30S ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CUUG*CAG*CUUACG

Length

13 nucleotides

Bulged bases

4OX9|1|A|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4OX9_005 not in the Motif Atlas

Homologous match to J3_4LFB_005

Geometric discrepancy: 0.1294

The information below is about J3_4LFB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_82572.1

Basepair signature

cWW-tSH-tWW-F-cWW-tHW-F-F-cWW

Number of instances in this motif group

2

Unit IDs

4OX9|1|A|C|990
4OX9|1|A|U|991
4OX9|1|A|U|992
4OX9|1|A|G|993
*
4OX9|1|A|C|1045
4OX9|1|A|A|1046
4OX9|1|A|G|1047
*
4OX9|1|A|C|1210
4OX9|1|A|U|1211
4OX9|1|A|U|1212
4OX9|1|A|A|1213
4OX9|1|A|C|1214
4OX9|1|A|G|1215

Current chains

Chain A

16S rRNA

Nearby chains

Chain N

30S ribosomal protein S14 type Z