3D structure

PDB id
4OX9 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the aminoglycoside resistance methyltransferase NpmA bound to the 30S ribosomal subunit
Experimental method
X-RAY DIFFRACTION
Resolution
3.8 Å

Loop

Sequence
CGC*GGACUGC*GAGGAAGGAG
Length
20 nucleotides
Bulged bases
4OX9|1|A|A|1183
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4OX9_008 not in the Motif Atlas
Homologous match to J3_4LFB_018
Geometric discrepancy: 0.0991
The information below is about J3_4LFB_018
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_17791.2
Basepair signature
cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW
Number of instances in this motif group
2

Unit IDs

4OX9|1|A|C|1116
4OX9|1|A|G|1117
4OX9|1|A|C|1118
*
4OX9|1|A|G|1155
4OX9|1|A|G|1156
4OX9|1|A|A|1157
4OX9|1|A|C|1158
4OX9|1|A|U|1159
4OX9|1|A|G|1160
4OX9|1|A|C|1161
*
4OX9|1|A|G|1175
4OX9|1|A|A|1176
4OX9|1|A|G|1177
4OX9|1|A|G|1178
4OX9|1|A|A|1179
4OX9|1|A|A|1180
4OX9|1|A|G|1181
4OX9|1|A|G|1182
4OX9|1|A|A|1183
4OX9|1|A|G|1184

Current chains

Chain A
16S rRNA

Nearby chains

Chain B
30S ribosomal protein S2
Chain G
30S ribosomal protein S7
Chain I
30S ribosomal protein S9
Chain J
30S ribosomal protein S10
Chain N
30S ribosomal protein S14 type Z

Coloring options:


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