3D structure

PDB id
4OX9 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the aminoglycoside resistance methyltransferase NpmA bound to the 30S ribosomal subunit
Experimental method
X-RAY DIFFRACTION
Resolution
3.8 Å

Loop

Sequence
GC*GGAAUCU*AGC
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4OX9_010 not in the Motif Atlas
Geometric match to J3_4LFB_010
Geometric discrepancy: 0.0589
The information below is about J3_4LFB_010
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_67856.4
Basepair signature
cWW-cWW-cSW-cWW-F-F-F-F
Number of instances in this motif group
4

Unit IDs

4OX9|1|A|G|46
4OX9|1|A|C|47
*
4OX9|1|A|G|361
4OX9|1|A|G|362
4OX9|1|A|A|363
4OX9|1|A|A|364
4OX9|1|A|U|365
4OX9|1|A|C|366
4OX9|1|A|U|367
*
4OX9|1|A|A|393
4OX9|1|A|G|394
4OX9|1|A|C|395

Current chains

Chain A
16S rRNA

Nearby chains

Chain L
30S ribosomal protein S12
Chain P
30S ribosomal protein S16

Coloring options:


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