J3_4P6F_014

3D structure

PDB id

4P6F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the peptolide 12C bound to bacterial ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GC*GUGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4P6F_014 not in the Motif Atlas

Homologous match to J3_7RQB_001

Geometric discrepancy: 0.0856

The information below is about J3_7RQB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_65070.3

Basepair signature

cWW-tWH-cWW-tSH-F-cWW-F

Number of instances in this motif group

4

Unit IDs

4P6F|1|RA|G|30
4P6F|1|RA|C|31
*
4P6F|1|RA|G|474
4P6F|1|RA|U|475
4P6F|1|RA|G|476
4P6F|1|RA|A|477
4P6F|1|RA|A|478
4P6F|1|RA|A|479
4P6F|1|RA|A|480
4P6F|1|RA|G|481
*
4P6F|1|RA|C|509
4P6F|1|RA|C|510

Current chains

Chain RA

23S ribosomal RNA

Nearby chains

Chain RU

50S ribosomal protein L20

Chain RW

50S ribosomal protein L22

Chain RY

50S ribosomal protein L24