J3_4P6F_053
3D structure
- PDB id
- 4P6F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the peptolide 12C bound to bacterial ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.6 Å
Loop
- Sequence
- CAUC*GUU*AUUAAAG
- Length
- 14 nucleotides
- Bulged bases
- 4P6F|1|YA|A|2518, 4P6F|1|YA|U|2519
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4P6F_053 not in the Motif Atlas
- Homologous match to J3_9DFE_017
- Geometric discrepancy: 0.1141
- The information below is about J3_9DFE_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_32601.6
- Basepair signature
- cWW-cWH-cWW-tWH-tSS-F-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
4P6F|1|YA|C|2517
4P6F|1|YA|A|2518
4P6F|1|YA|U|2519
4P6F|1|YA|C|2520
*
4P6F|1|YA|G|2545
4P6F|1|YA|U|2546
4P6F|1|YA|U|2547
*
4P6F|1|YA|A|2561
4P6F|1|YA|U|2562
4P6F|1|YA|U|2563
4P6F|1|YA|A|2564
4P6F|1|YA|A|2565
4P6F|1|YA|A|2566
4P6F|1|YA|G|2567
Current chains
- Chain YA
- 23S ribosomal RNA
Nearby chains
- Chain YO
- 50S ribosomal protein L14
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