J3_4P6F_064

3D structure

PDB id

4P6F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the peptolide 12C bound to bacterial ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CGAAG*CGCCAGAGAG*CGUAG

Length

20 nucleotides

Bulged bases

4P6F|1|RA|G|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4P6F_064 not in the Motif Atlas

Homologous match to J3_9DFE_006

Geometric discrepancy: 0.0736

The information below is about J3_9DFE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_77124.1

Basepair signature

cWW-tSH-cHH-cSW-F-tHS-cWW-cWW-F-F-cWW-F

Number of instances in this motif group

4

Unit IDs

4P6F|1|RA|C|297
4P6F|1|RA|G|298
4P6F|1|RA|A|299
4P6F|1|RA|A|300
4P6F|1|RA|G|301
*
4P6F|1|RA|C|316
4P6F|1|RA|G|317
4P6F|1|RA|C|318
4P6F|1|RA|C|319
4P6F|1|RA|A|320
4P6F|1|RA|G|321
4P6F|1|RA|A|322
4P6F|1|RA|G|323
4P6F|1|RA|A|324
4P6F|1|RA|G|325
*
4P6F|1|RA|C|337
4P6F|1|RA|G|338
4P6F|1|RA|U|339
4P6F|1|RA|A|340
4P6F|1|RA|G|341

Current chains

Chain RA

23S ribosomal RNA

Nearby chains

Chain RF

50S ribosomal protein L4

Chain RY

50S ribosomal protein L24