J3_4P6F_065

3D structure

PDB id

4P6F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the peptolide 12C bound to bacterial ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4P6F_065 not in the Motif Atlas

Homologous match to J3_9DFE_013

Geometric discrepancy: 0.0741

The information below is about J3_9DFE_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.3

Basepair signature

cWW-tSH-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

4P6F|1|RA|G|1424
4P6F|1|RA|G|1425
4P6F|1|RA|G|1426
4P6F|1|RA|A|1427
4P6F|1|RA|C|1428
4P6F|1|RA|G|1429
*
4P6F|1|RA|C|1564
4P6F|1|RA|C|1565
*
4P6F|1|RA|G|1568
4P6F|1|RA|A|1569
4P6F|1|RA|A|1570
4P6F|1|RA|A|1571
4P6F|1|RA|A|1572
4P6F|1|RA|G|1573
4P6F|1|RA|C|1574

Current chains

Chain RA

23S ribosomal RNA

Nearby chains

Chain RD

50S ribosomal protein L2