J3_4P6F_067

3D structure

PDB id

4P6F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the peptolide 12C bound to bacterial ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GCCUAAG*UAGGAAUCU*AGC

Length

19 nucleotides

Bulged bases

4P6F|1|XA|C|48, 4P6F|1|XA|A|50, 4P6F|1|XA|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4P6F_067 not in the Motif Atlas

Homologous match to J3_4LFB_014

Geometric discrepancy: 0.0764

The information below is about J3_4LFB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_63856.1

Basepair signature

cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

4P6F|1|XA|G|46
4P6F|1|XA|C|47
4P6F|1|XA|C|48
4P6F|1|XA|U|49
4P6F|1|XA|A|50
4P6F|1|XA|A|51
4P6F|1|XA|G|52
*
4P6F|1|XA|U|359
4P6F|1|XA|A|360
4P6F|1|XA|G|361
4P6F|1|XA|G|362
4P6F|1|XA|A|363
4P6F|1|XA|A|364
4P6F|1|XA|U|365
4P6F|1|XA|C|366
4P6F|1|XA|U|367
*
4P6F|1|XA|A|393
4P6F|1|XA|G|394
4P6F|1|XA|C|395

Current chains

Chain XA

16S ribosomal RNA

Nearby chains

Chain XL

30S ribosomal protein S12

Chain XP

30S ribosomal protein S16