3D structure

PDB id
4P70 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of Unmodified tRNA Proline (CGG) Bound to Codon CCG on the Ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.68 Å

Loop

Sequence
CGAAG*CGCCAGAGAG*CGUAG
Length
20 nucleotides
Bulged bases
4P70|1|YA|G|321
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4P70_075 not in the Motif Atlas
Homologous match to J3_9DFE_006
Geometric discrepancy: 0.078
The information below is about J3_9DFE_006
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_46299.2
Basepair signature
cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW
Number of instances in this motif group
3

Unit IDs

4P70|1|YA|C|297
4P70|1|YA|G|298
4P70|1|YA|A|299
4P70|1|YA|A|300
4P70|1|YA|G|301
*
4P70|1|YA|C|316
4P70|1|YA|G|317
4P70|1|YA|C|318
4P70|1|YA|C|319
4P70|1|YA|A|320
4P70|1|YA|G|321
4P70|1|YA|A|322
4P70|1|YA|G|323
4P70|1|YA|A|324
4P70|1|YA|G|325
*
4P70|1|YA|C|337
4P70|1|YA|G|338
4P70|1|YA|U|339
4P70|1|YA|A|340
4P70|1|YA|G|341

Current chains

Chain YA
23S rRNA

Nearby chains

Chain YF
50S ribosomal protein L4
Chain YY
50S ribosomal protein L24

Coloring options:


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