J3_4P9R_001

3D structure

PDB id

4P9R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Speciation of a group I intron into a lariat capping ribozyme (Heavy atom derivative)

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GUAUC*GAAG*CAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4P9R_001 not in the Motif Atlas

Geometric match to J3_6GYV_001

Geometric discrepancy: 0.0501

The information below is about J3_6GYV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_73870.1

Basepair signature

cWW-F-F-F-F-F-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

4P9R|1|A|G|7
4P9R|1|A|U|8
4P9R|1|A|A|9
4P9R|1|A|U|10
4P9R|1|A|C|11
*
4P9R|1|A|G|230
4P9R|1|A|A|231
4P9R|1|A|A|232
4P9R|1|A|G|233
*
4P9R|1|A|C|257
4P9R|1|A|A|258
4P9R|1|A|A|259
4P9R|1|A|U|260

Current chains

Chain A

RNA (189-MER)

Nearby chains