J3_4QCN_008
3D structure
- PDB id
- 4QCN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA- substrates in the A and P sites. This entry contains the 50S subunit of the first 70S ribosome in the ASU.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- CAC*GGUAAG*CGAGG
- Length
- 14 nucleotides
- Bulged bases
- 4QCN|1|A|A|2803
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4QCN_008 not in the Motif Atlas
- Geometric match to J3_9DFE_018
- Geometric discrepancy: 0.1202
- The information below is about J3_9DFE_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_24127.1
- Basepair signature
- cWW-F-cWW-tWH-F-F-tHS-cWW
- Number of instances in this motif group
- 2
Unit IDs
4QCN|1|A|C|2802
4QCN|1|A|A|2803
4QCN|1|A|C|2804
*
4QCN|1|A|G|2816
4QCN|1|A|G|2817
4QCN|1|A|U|2818
4QCN|1|A|A|2819
4QCN|1|A|A|2820
4QCN|1|A|G|2821
*
4QCN|1|A|C|2899
4QCN|1|A|G|2900
4QCN|1|A|A|2901
4QCN|1|A|G|2902
4QCN|1|A|G|2903
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain E
- 50S ribosomal protein L3
- Chain W
- 50S ribosomal protein L22
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