J3_4QJH_002

3D structure

PDB id

4QJH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the Twister Ribozyme with the Nucleotide 5'- to the Cleavage Site Ordered at 4.1 A Resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.88 Å

Loop

Sequence

AGCU*AG*CAAAAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4QJH_002 not in the Motif Atlas

Geometric match to J3_4QJD_002

Geometric discrepancy: 0.3307

The information below is about J3_4QJD_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_36765.1

Basepair signature

cWW-F-F-F-F-cWW-F-F-cWW-F

Number of instances in this motif group

1

Unit IDs

4QJH|1|C|A|15
4QJH|1|C|G|16
4QJH|1|C|C|17
4QJH|1|C|U|18
*
4QJH|1|D|A|35
4QJH|1|D|G|36
*
4QJH|1|D|C|51
4QJH|1|D|A|52
4QJH|1|D|A|53
4QJH|1|D|A|54
4QJH|1|D|A|55
4QJH|1|D|A|56
4QJH|1|D|U|57

Current chains

Chain C

Twister Ribozyme

Chain D

Twister Ribozyme

Nearby chains