J3_4QJH_003

3D structure

PDB id

4QJH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the Twister Ribozyme with the Nucleotide 5'- to the Cleavage Site Ordered at 4.1 A Resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.88 Å

Loop

Sequence

CAGCU*AG*CAAAAAUAG

Length

16 nucleotides

Bulged bases

4QJH|1|F|A|52, 4QJH|1|F|A|53, 4QJH|1|F|A|54, 4QJH|1|F|A|58

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4QJH|1|E|C|14
4QJH|1|E|A|15
4QJH|1|E|G|16
4QJH|1|E|C|17
4QJH|1|E|U|18
*
4QJH|1|F|A|35
4QJH|1|F|G|36
*
4QJH|1|F|C|51
4QJH|1|F|A|52
4QJH|1|F|A|53
4QJH|1|F|A|54
4QJH|1|F|A|55
4QJH|1|F|A|56
4QJH|1|F|U|57
4QJH|1|F|A|58
4QJH|1|F|G|59

Current chains

Chain E

Twister Ribozyme

Chain F

Twister Ribozyme

Nearby chains