J3_4QK9_002

3D structure

PDB id

4QK9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermovirga lienii c-di-AMP riboswitch

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

UGAAU*AA*UAA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_80578.1

Basepair signature

cWW-F-F-F-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

4QK9|1|A|U|6
4QK9|1|A|G|7
4QK9|1|A|A|8
4QK9|1|A|A|9
4QK9|1|A|U|10
*
4QK9|1|A|A|23
4QK9|1|A|A|24
*
4QK9|1|A|U|108
4QK9|1|A|A|109
4QK9|1|A|A|110

Current chains

Chain A

C-di-AMP riboswitch

Nearby chains