J3_4R0D_001

3D structure

PDB id

4R0D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a eukaryotic group II intron lariat

Experimental method

X-RAY DIFFRACTION

Resolution

3.68 Å

Loop

Sequence

UAUC*GAGACAAUG*CUA

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4R0D|1|A|U|68
4R0D|1|A|A|69
4R0D|1|A|U|70
4R0D|1|A|C|71
*
4R0D|1|A|G|112
4R0D|1|A|A|113
4R0D|1|A|G|114
4R0D|1|A|A|115
4R0D|1|A|C|116
4R0D|1|A|A|117
4R0D|1|A|A|118
4R0D|1|A|U|119
4R0D|1|A|G|120
*
4R0D|1|A|C|150
4R0D|1|A|U|151
4R0D|1|A|A|152

Current chains

Chain A

GROUP IIB INTRON LARIAT

Nearby chains

Chain B

LIGATED EXONS