J3_4R0D_005

3D structure

PDB id

4R0D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a eukaryotic group II intron lariat

Experimental method

X-RAY DIFFRACTION

Resolution

3.68 Å

Loop

Sequence

CUCC*GAGG*UAUCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4R0D|1|A|C|360
4R0D|1|A|U|361
4R0D|1|A|C|362
4R0D|1|A|C|363
*
4R0D|1|A|G|380
4R0D|1|A|A|381
4R0D|1|A|G|382
4R0D|1|A|G|383
*
4R0D|1|A|U|402
4R0D|1|A|A|403
4R0D|1|A|U|404
4R0D|1|A|C|405
4R0D|1|A|G|406

Current chains

Chain A

GROUP IIB INTRON LARIAT

Nearby chains