J3_4R4V_001

3D structure

PDB id

4R4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the VS ribozyme - G638A mutant

Experimental method

X-RAY DIFFRACTION

Resolution

3.07 Å

Loop

Sequence

CGCAAUC*GUAG*CGAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_89044.1

Basepair signature

cWW-cSW-F-cWW-cSW-cWW-cHW-F-cWW

Number of instances in this motif group

1

Unit IDs

4R4V|1|A|C|610
4R4V|1|A|G|611
4R4V|1|A|C|612
4R4V|1|A|A|613
4R4V|1|A|A|614
4R4V|1|A|U|615
4R4V|1|A|C|616
*
4R4V|1|A|G|643
4R4V|1|A|U|644
4R4V|1|A|A|645
4R4V|1|A|G|646
*
4R4V|1|A|C|772
4R4V|1|A|G|773
4R4V|1|A|A|774
4R4V|1|A|G|775

Current chains

Chain A

VS ribozyme RNA

Nearby chains