J3_4R4V_003

3D structure

PDB id

4R4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the VS ribozyme - G638A mutant

Experimental method

X-RAY DIFFRACTION

Resolution

3.07 Å

Loop

Sequence

CUCC*GUCG*UGUGAUUG

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_98484.1

Basepair signature

cWW-F-F-tSH-cHW-F-cWW-tSS-cSS-F-cWW-cWW

Number of instances in this motif group

1

Unit IDs

4R4V|1|A|C|663
4R4V|1|A|U|664
4R4V|1|A|C|665
4R4V|1|A|C|666
*
4R4V|1|A|G|680
4R4V|1|A|U|681
4R4V|1|A|C|682
4R4V|1|A|G|683
*
4R4V|1|A|U|703
4R4V|1|A|G|704
4R4V|1|A|U|705
4R4V|1|A|G|706
4R4V|1|A|A|707
4R4V|1|A|U|708
4R4V|1|A|U|709
4R4V|1|A|G|710

Current chains

Chain A

VS ribozyme RNA

Nearby chains