J3_4TUA_063

3D structure

PDB id

4TUA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ASL-Thr bound to Codon ACC-A on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CGAAG*CGCCAGAGAG*CGUAG

Length

20 nucleotides

Bulged bases

4TUA|1|RA|G|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4TUA_063 not in the Motif Atlas

Homologous match to J3_9DFE_006

Geometric discrepancy: 0.073

The information below is about J3_9DFE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

4TUA|1|RA|C|297
4TUA|1|RA|G|298
4TUA|1|RA|A|299
4TUA|1|RA|A|300
4TUA|1|RA|G|301
*
4TUA|1|RA|C|316
4TUA|1|RA|G|317
4TUA|1|RA|C|318
4TUA|1|RA|C|319
4TUA|1|RA|A|320
4TUA|1|RA|G|321
4TUA|1|RA|A|322
4TUA|1|RA|G|323
4TUA|1|RA|A|324
4TUA|1|RA|G|325
*
4TUA|1|RA|C|337
4TUA|1|RA|G|338
4TUA|1|RA|U|339
4TUA|1|RA|A|340
4TUA|1|RA|G|341

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RF

50S ribosomal protein L4

Chain RY

50S ribosomal protein L24