J3_4TUC_062

3D structure

PDB id

4TUC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ASL-SufJ bound to Codon ACC-A on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CGAAG*CGCCAGAGAG*CGUAG

Length

20 nucleotides

Bulged bases

4TUC|1|RA|G|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4TUC_062 not in the Motif Atlas

Homologous match to J3_9DFE_006

Geometric discrepancy: 0.0828

The information below is about J3_9DFE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_77124.1

Basepair signature

cWW-tSH-cHH-cSW-F-tHS-cWW-cWW-F-F-cWW-F

Number of instances in this motif group

4

Unit IDs

4TUC|1|RA|C|297
4TUC|1|RA|G|298
4TUC|1|RA|A|299
4TUC|1|RA|A|300
4TUC|1|RA|G|301
*
4TUC|1|RA|C|316
4TUC|1|RA|G|317
4TUC|1|RA|C|318
4TUC|1|RA|C|319
4TUC|1|RA|A|320
4TUC|1|RA|G|321
4TUC|1|RA|A|322
4TUC|1|RA|G|323
4TUC|1|RA|A|324
4TUC|1|RA|G|325
*
4TUC|1|RA|C|337
4TUC|1|RA|G|338
4TUC|1|RA|U|339
4TUC|1|RA|A|340
4TUC|1|RA|G|341

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RF

50S ribosomal protein L4

Chain RY

50S ribosomal protein L24