J3_4TUC_063

3D structure

PDB id

4TUC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ASL-SufJ bound to Codon ACC-A on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4TUC_063 not in the Motif Atlas

Homologous match to J3_9DFE_013

Geometric discrepancy: 0.084

The information below is about J3_9DFE_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.3

Basepair signature

cWW-tSH-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

4TUC|1|RA|G|1424
4TUC|1|RA|G|1425
4TUC|1|RA|G|1426
4TUC|1|RA|A|1427
4TUC|1|RA|C|1428
4TUC|1|RA|G|1429
*
4TUC|1|RA|C|1564
4TUC|1|RA|C|1565
*
4TUC|1|RA|G|1568
4TUC|1|RA|A|1569
4TUC|1|RA|A|1570
4TUC|1|RA|A|1571
4TUC|1|RA|A|1572
4TUC|1|RA|G|1573
4TUC|1|RA|C|1574

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RD

50S ribosomal protein L2