J3_4TUD_013

3D structure

PDB id

4TUD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ASL-SufJ bound to Codon ACC-C on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CAAUG*CCCAGUUC*GCCG

Length

17 nucleotides

Bulged bases

4TUD|1|QA|U|1240

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4TUD_013 not in the Motif Atlas

Homologous match to J3_4LFB_009

Geometric discrepancy: 0.1202

The information below is about J3_4LFB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.6

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

4TUD|1|QA|C|1237
4TUD|1|QA|A|1238
4TUD|1|QA|A|1239
4TUD|1|QA|U|1240
4TUD|1|QA|G|1241
*
4TUD|1|QA|C|1296
4TUD|1|QA|C|1297
4TUD|1|QA|C|1298
4TUD|1|QA|A|1299
4TUD|1|QA|G|1300
4TUD|1|QA|U|1301
4TUD|1|QA|U|1302
4TUD|1|QA|C|1303
*
4TUD|1|QA|G|1334
4TUD|1|QA|C|1335
4TUD|1|QA|C|1336
4TUD|1|QA|G|1337

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QG

30S ribosomal protein S7

Chain QM

30S ribosomal protein S13

Chain QU

30S ribosomal protein Thx