J3_4TUD_022

3D structure

PDB id

4TUD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ASL-SufJ bound to Codon ACC-C on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GCGGGAC*GGCAG*CC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4TUD_022 not in the Motif Atlas

Homologous match to J3_7RQB_009

Geometric discrepancy: 0.119

The information below is about J3_7RQB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_04858.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

4TUD|1|RA|G|1344
4TUD|1|RA|C|1345
4TUD|1|RA|G|1346
4TUD|1|RA|G|1347
4TUD|1|RA|G|1348
4TUD|1|RA|A|1349
4TUD|1|RA|C|1350
*
4TUD|1|RA|G|1381
4TUD|1|RA|G|1382
4TUD|1|RA|C|1383
4TUD|1|RA|A|1384
4TUD|1|RA|G|1385
*
4TUD|1|RA|C|1402
4TUD|1|RA|C|1403

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R7

50S ribosomal protein L34