J3_4TUD_025

3D structure

PDB id

4TUD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ASL-SufJ bound to Codon ACC-C on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

4TUD|1|RA|A|2518, 4TUD|1|RA|U|2519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4TUD_025 not in the Motif Atlas

Homologous match to J3_9DFE_017

Geometric discrepancy: 0.1232

The information below is about J3_9DFE_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.5

Basepair signature

cWW-tWH-cHW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

4TUD|1|RA|C|2517
4TUD|1|RA|A|2518
4TUD|1|RA|U|2519
4TUD|1|RA|C|2520
*
4TUD|1|RA|G|2545
4TUD|1|RA|U|2546
4TUD|1|RA|U|2547
*
4TUD|1|RA|A|2561
4TUD|1|RA|U|2562
4TUD|1|RA|U|2563
4TUD|1|RA|A|2564
4TUD|1|RA|A|2565
4TUD|1|RA|A|2566
4TUD|1|RA|G|2567

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RO

50S ribosomal protein L14