J3_4TUD_042
3D structure
- PDB id
- 4TUD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of ASL-SufJ bound to Codon ACC-C on the Ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.6 Å
Loop
- Sequence
- GC*GUGAAAAG*CC
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4TUD_042 not in the Motif Atlas
- Homologous match to J3_7RQB_001
- Geometric discrepancy: 0.0572
- The information below is about J3_7RQB_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_65070.3
- Basepair signature
- cWW-tWH-cWW-tSH-F-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
4TUD|1|YA|G|30
4TUD|1|YA|C|31
*
4TUD|1|YA|G|474
4TUD|1|YA|U|475
4TUD|1|YA|G|476
4TUD|1|YA|A|477
4TUD|1|YA|A|478
4TUD|1|YA|A|479
4TUD|1|YA|A|480
4TUD|1|YA|G|481
*
4TUD|1|YA|C|509
4TUD|1|YA|C|510
Current chains
- Chain YA
- 23S rRNA
Nearby chains
- Chain YU
- 50S ribosomal protein L20
- Chain YW
- 50S ribosomal protein L22
- Chain YY
- 50S ribosomal protein L24
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