J3_4TUD_060

3D structure

PDB id

4TUD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ASL-SufJ bound to Codon ACC-C on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

UG*UGUU*GCAA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4TUD_060 not in the Motif Atlas

Homologous match to J3_4LFB_017

Geometric discrepancy: 0.0821

The information below is about J3_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_79369.1

Basepair signature

cWW-cWW-tSS-F-F-cWW-F

Number of instances in this motif group

1

Unit IDs

4TUD|1|QA|U|1073
4TUD|1|QA|G|1074
*
4TUD|1|QA|U|1083
4TUD|1|QA|G|1084
4TUD|1|QA|U|1085
4TUD|1|QA|U|1086
*
4TUD|1|QA|G|1099
4TUD|1|QA|C|1100
4TUD|1|QA|A|1101
4TUD|1|QA|A|1102

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QB

30S ribosomal protein S2

Chain QE

30S ribosomal protein S5