J3_4TUE_013

3D structure

PDB id

4TUE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ASL-SufJ bound to Codon ACC-U on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CAAUG*CCCAGUUC*GCCG

Length

17 nucleotides

Bulged bases

4TUE|1|QA|U|1240

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4TUE_013 not in the Motif Atlas

Homologous match to J3_4LFB_009

Geometric discrepancy: 0.1384

The information below is about J3_4LFB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.6

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

4TUE|1|QA|C|1237
4TUE|1|QA|A|1238
4TUE|1|QA|A|1239
4TUE|1|QA|U|1240
4TUE|1|QA|G|1241
*
4TUE|1|QA|C|1296
4TUE|1|QA|C|1297
4TUE|1|QA|C|1298
4TUE|1|QA|A|1299
4TUE|1|QA|G|1300
4TUE|1|QA|U|1301
4TUE|1|QA|U|1302
4TUE|1|QA|C|1303
*
4TUE|1|QA|G|1334
4TUE|1|QA|C|1335
4TUE|1|QA|C|1336
4TUE|1|QA|G|1337

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QG

30S ribosomal protein S7

Chain QM

30S ribosomal protein S13

Chain QU

30S ribosomal protein Thx