3D structure

PDB id
4U1V (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the E. coli ribosome bound to linopristin.
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
UG*UGUUG*CGCAA
Length
12 nucleotides
Bulged bases
4U1V|1|CA|U|1086
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4U1V_070 not in the Motif Atlas
Homologous match to J3_5J7L_009
Geometric discrepancy: 0.1019
The information below is about J3_5J7L_009
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_76043.3
Basepair signature
cWW-cWW-tSS-F-F-F-F-cWW
Number of instances in this motif group
3

Unit IDs

4U1V|1|CA|U|1073
4U1V|1|CA|G|1074
*
4U1V|1|CA|U|1083
4U1V|1|CA|G|1084
4U1V|1|CA|U|1085
4U1V|1|CA|U|1086
4U1V|1|CA|G|1087
*
4U1V|1|CA|C|1098
4U1V|1|CA|G|1099
4U1V|1|CA|C|1100
4U1V|1|CA|A|1101
4U1V|1|CA|A|1102

Current chains

Chain CA
16S rRNA

Nearby chains

Chain CB
30S ribosomal protein S2
Chain CE
30S ribosomal protein S5

Coloring options:


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